3D structure

PDB id
8Y0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dormant ribosome with SERBP1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
AAG*CGAAAG*CCAUAAACGAUG*UU
Length
23 nucleotides
Bulged bases
8Y0X|1|S2|A|672, 8Y0X|1|S2|A|1083, 8Y0X|1|S2|C|1085, 8Y0X|1|S2|A|1087
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8Y0X_012 not in the Motif Atlas
Homologous match to J4_8P9A_022
Geometric discrepancy: 0.0749
The information below is about J4_8P9A_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_14595.1
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
5

Unit IDs

8Y0X|1|S2|A|671
8Y0X|1|S2|A|672
8Y0X|1|S2|G|673
*
8Y0X|1|S2|C|1032
8Y0X|1|S2|G|1033
8Y0X|1|S2|A|1034
8Y0X|1|S2|A|1035
8Y0X|1|S2|A|1036
8Y0X|1|S2|G|1037
*
8Y0X|1|S2|C|1078
8Y0X|1|S2|C|1079
8Y0X|1|S2|A|1080
8Y0X|1|S2|U|1081
8Y0X|1|S2|A|1082
8Y0X|1|S2|A|1083
8Y0X|1|S2|A|1084
8Y0X|1|S2|C|1085
8Y0X|1|S2|G|1086
8Y0X|1|S2|A|1087
8Y0X|1|S2|U|1088
8Y0X|1|S2|G|1089
*
8Y0X|1|S2|U|1160
8Y0X|1|S2|U|1161

Current chains

Chain S2
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain Ln
60S ribosomal protein L41
Chain Lp
60S ribosomal protein L37a
Chain SL
40S ribosomal protein S11
Chain SN
40S ribosomal protein S13
Chain SO
40S ribosomal protein S14
Chain SW
40S ribosomal protein S15a
Chain SX
40S ribosomal protein S23
Chain Sa
40S ribosomal protein S26

Coloring options:


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