J4_8Y36_007

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

8Y36|1|A|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8Y36_007 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1328

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

8Y36|1|A|C|1860
8Y36|1|A|U|1861
8Y36|1|A|G|1862
*
8Y36|1|A|C|1932
8Y36|1|A|G|1933
*
8Y36|1|A|C|1951
8Y36|1|A|C|1952
8Y36|1|A|U|1953
8Y36|1|A|A|1954
8Y36|1|A|A|1955
8Y36|1|A|G|1956
8Y36|1|A|G|1957
8Y36|1|A|U|1958
8Y36|1|A|A|1959
8Y36|1|A|G|1960
*
8Y36|1|A|C|1994
8Y36|1|A|G|1995
8Y36|1|A|A|1996
8Y36|1|A|A|1997
8Y36|1|A|A|1998
8Y36|1|A|G|1999

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2