J4_8Y37_001

3D structure

PDB id

8Y37 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8Y37|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8Y37_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1525

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8Y37|1|A|C|271
8Y37|1|A|C|272
*
8Y37|1|A|G|416
8Y37|1|A|A|417
8Y37|1|A|G|418
8Y37|1|A|U|419
8Y37|1|A|A|420
8Y37|1|A|C|421
*
8Y37|1|A|G|445
8Y37|1|A|G|446
8Y37|1|A|A|447
8Y37|1|A|A|448
8Y37|1|A|U|449
8Y37|1|A|C|450
8Y37|1|A|U|451
8Y37|1|A|G|452
*
8Y37|1|A|U|467
8Y37|1|A|A|468
8Y37|1|A|A|469
8Y37|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein bL28