J4_8Y39_001

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8Y39|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8Y39_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1444

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8Y39|1|A|C|271
8Y39|1|A|C|272
*
8Y39|1|A|G|416
8Y39|1|A|A|417
8Y39|1|A|G|418
8Y39|1|A|U|419
8Y39|1|A|A|420
8Y39|1|A|C|421
*
8Y39|1|A|G|445
8Y39|1|A|G|446
8Y39|1|A|A|447
8Y39|1|A|A|448
8Y39|1|A|U|449
8Y39|1|A|C|450
8Y39|1|A|U|451
8Y39|1|A|G|452
*
8Y39|1|A|U|467
8Y39|1|A|A|468
8Y39|1|A|A|469
8Y39|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein bL28