J4_8Y39_010

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8Y39_010 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1809

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8Y39|1|A|G|2670
8Y39|1|A|A|2671
8Y39|1|A|G|2672
8Y39|1|A|C|2673
*
8Y39|1|A|G|2701
8Y39|1|A|A|2702
8Y39|1|A|C|2703
*
8Y39|1|A|G|2758
8Y39|1|A|G|2759
8Y39|1|A|A|2760
8Y39|1|A|C|2761
8Y39|1|A|G|2762
*
8Y39|1|A|C|2796
8Y39|1|A|C|2797
8Y39|1|A|C|2798

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain H

Large ribosomal subunit protein uL13

Chain I

Large ribosomal subunit protein uL14