J4_8Y5K_012
3D structure
- PDB id
- 8Y5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-A state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- GAGGG*CGCAUAACG*CCAAAG*UGC
- Length
- 23 nucleotides
- Bulged bases
- 8Y5K|1|3|C|183, 8Y5K|1|3|A|197
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y5K|1|3|G|142
8Y5K|1|3|A|143
8Y5K|1|3|G|144
8Y5K|1|3|G|145
8Y5K|1|3|G|146
*
8Y5K|1|3|C|176
8Y5K|1|3|G|177
8Y5K|1|3|C|178
8Y5K|1|3|A|179
8Y5K|1|3|U|180
8Y5K|1|3|A|181
8Y5K|1|3|A|182
8Y5K|1|3|C|183
8Y5K|1|3|G|184
*
8Y5K|1|3|C|193
8Y5K|1|3|C|194
8Y5K|1|3|A|195
8Y5K|1|3|A|196
8Y5K|1|3|A|197
8Y5K|1|3|G|198
*
8Y5K|1|3|U|219
8Y5K|1|3|G|220
8Y5K|1|3|C|221
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain Y
- 30S ribosomal protein S20
Coloring options: