J4_8Y5O_014
3D structure
- PDB id
- 8Y5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGGA*UACAAUG*CGUAGUCC*GUCGGAA
- Length
- 26 nucleotides
- Bulged bases
- 8Y5O|1|3|U|1240, 8Y5O|1|3|C|1302
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y5O|1|3|U|943
8Y5O|1|3|G|944
8Y5O|1|3|G|945
8Y5O|1|3|A|946
*
8Y5O|1|3|U|1235
8Y5O|1|3|A|1236
8Y5O|1|3|C|1237
8Y5O|1|3|A|1238
8Y5O|1|3|A|1239
8Y5O|1|3|U|1240
8Y5O|1|3|G|1241
*
8Y5O|1|3|C|1296
8Y5O|1|3|G|1297
8Y5O|1|3|U|1298
8Y5O|1|3|A|1299
8Y5O|1|3|G|1300
8Y5O|1|3|U|1301
8Y5O|1|3|C|1302
8Y5O|1|3|C|1303
*
8Y5O|1|3|G|1334
8Y5O|1|3|U|1335
8Y5O|1|3|C|1336
8Y5O|1|3|G|1337
8Y5O|1|3|G|1338
8Y5O|1|3|A|1339
8Y5O|1|3|A|1340
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain L
- 30S ribosomal protein S7
- Chain N
- 30S ribosomal protein S9
- Chain R
- 30S ribosomal protein S13
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