J4_8Y5S_001

3D structure

PDB id

8Y5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8Y5S|1|1|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y5S|1|1|C|268
8Y5S|1|1|C|269
*
8Y5S|1|1|G|370
8Y5S|1|1|A|371
8Y5S|1|1|G|372
8Y5S|1|1|U|373
8Y5S|1|1|A|374
8Y5S|1|1|G|375
*
8Y5S|1|1|U|399
8Y5S|1|1|G|400
8Y5S|1|1|A|401
8Y5S|1|1|A|402
8Y5S|1|1|U|403
8Y5S|1|1|A|404
8Y5S|1|1|U|405
8Y5S|1|1|G|406
*
8Y5S|1|1|C|421
8Y5S|1|1|A|422
8Y5S|1|1|A|423
8Y5S|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28