J4_8Y6O_001

3D structure

PDB id

8Y6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part

Experimental method

ELECTRON MICROSCOPY

Resolution

3.38 Å

Loop

Sequence

CU*AC*GC*GG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y6O|1|P|C|12
8Y6O|1|P|U|13
*
8Y6O|1|P|A|26
8Y6O|1|P|C|27
*
8Y6O|1|P|G|55
8Y6O|1|P|C|56
*
8Y6O|1|P|G|79
8Y6O|1|P|G|80

Current chains

Chain P

U11 snRNA

Nearby chains

Chain A

pre-mRNA

Chain V

Zinc finger matrin-type protein 5

Chain W

U11/U12 small nuclear ribonucleoprotein 35 kDa protein

Chain X

U11/U12 small nuclear ribonucleoprotein 25 kDa protein

Chain Y

U11/U12 small nuclear ribonucleoprotein 48 kDa protein