J4_8YDF_011

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8YDF|1|3|C|183, 8YDF|1|3|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDF|1|3|G|142
8YDF|1|3|A|143
8YDF|1|3|G|144
*
8YDF|1|3|C|178
8YDF|1|3|A|179
8YDF|1|3|U|180
8YDF|1|3|A|181
8YDF|1|3|A|182
8YDF|1|3|C|183
8YDF|1|3|G|184
*
8YDF|1|3|C|193
8YDF|1|3|C|194
8YDF|1|3|A|195
8YDF|1|3|A|196
8YDF|1|3|A|197
8YDF|1|3|G|198
*
8YDF|1|3|U|219
8YDF|1|3|G|220
8YDF|1|3|C|221

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Y

30S ribosomal protein S20