J4_8YDH_003

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8YDH|1|1|G|1271, 8YDH|1|1|A|1272, 8YDH|1|1|U|1273, 8YDH|1|1|A|1274, 8YDH|1|1|A|1275, 8YDH|1|1|C|1646, 8YDH|1|1|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDH|1|1|C|1270
8YDH|1|1|G|1271
8YDH|1|1|A|1272
8YDH|1|1|U|1273
8YDH|1|1|A|1274
8YDH|1|1|A|1275
8YDH|1|1|A|1276
*
8YDH|1|1|U|1294
8YDH|1|1|C|1295
*
8YDH|1|1|G|1645
8YDH|1|1|C|1646
8YDH|1|1|U|1647
8YDH|1|1|U|1648
*
8YDH|1|1|A|2009
8YDH|1|1|G|2010

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22