J4_8YDH_008
3D structure
- PDB id
- 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.55 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 8YDH|1|1|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8YDH_008 not in the Motif Atlas
- Homologous match to J4_8B0X_013
- Geometric discrepancy: 0.1314
- The information below is about J4_8B0X_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8YDH|1|1|C|2285
8YDH|1|1|G|2286
8YDH|1|1|A|2287
8YDH|1|1|A|2288
8YDH|1|1|G|2289
*
8YDH|1|1|U|2343
8YDH|1|1|U|2344
8YDH|1|1|G|2345
8YDH|1|1|A|2346
8YDH|1|1|C|2347
*
8YDH|1|1|G|2370
8YDH|1|1|G|2371
8YDH|1|1|U|2372
*
8YDH|1|1|A|2381
8YDH|1|1|G|2382
8YDH|1|1|G|2383
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L33
- Chain E
- 50S ribosomal protein L35
- Chain o
- 50S ribosomal protein L18
- Chain w
- 50S ribosomal protein L27
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