J4_8YDI_003

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8YDI|1|1|G|1271, 8YDI|1|1|A|1272, 8YDI|1|1|U|1273, 8YDI|1|1|A|1274, 8YDI|1|1|A|1275, 8YDI|1|1|C|1646, 8YDI|1|1|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDI|1|1|C|1270
8YDI|1|1|G|1271
8YDI|1|1|A|1272
8YDI|1|1|U|1273
8YDI|1|1|A|1274
8YDI|1|1|A|1275
8YDI|1|1|A|1276
*
8YDI|1|1|U|1294
8YDI|1|1|C|1295
*
8YDI|1|1|G|1645
8YDI|1|1|C|1646
8YDI|1|1|U|1647
8YDI|1|1|U|1648
*
8YDI|1|1|A|2009
8YDI|1|1|G|2010

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22