J4_8YDJ_012

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8YDJ|1|3|C|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDJ|1|3|G|142
8YDJ|1|3|A|143
8YDJ|1|3|G|144
*
8YDJ|1|3|C|178
8YDJ|1|3|A|179
8YDJ|1|3|U|180
8YDJ|1|3|A|181
8YDJ|1|3|A|182
8YDJ|1|3|C|183
8YDJ|1|3|G|184
*
8YDJ|1|3|C|193
8YDJ|1|3|C|194
8YDJ|1|3|A|195
8YDJ|1|3|A|196
8YDJ|1|3|A|197
8YDJ|1|3|G|198
*
8YDJ|1|3|U|219
8YDJ|1|3|G|220
8YDJ|1|3|C|221

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Y

30S ribosomal protein S20