J4_8YLD_005
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8YLD|1|A|A|1452, 8YLD|1|A|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8YLD_005 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.1308
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_34212.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8YLD|1|A|C|1451
8YLD|1|A|A|1452
8YLD|1|A|A|1453
8YLD|1|A|A|1454
8YLD|1|A|U|1455
8YLD|1|A|A|1456
8YLD|1|A|U|1457
*
8YLD|1|A|A|1475
8YLD|1|A|G|1476
*
8YLD|1|A|U|1877
8YLD|1|A|G|1878
8YLD|1|A|A|1879
8YLD|1|A|U|1880
*
8YLD|1|A|A|2352
8YLD|1|A|G|2353
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain R
- Large ribosomal subunit protein uL22A
- Chain T
- Large ribosomal subunit protein eL19A
- Chain f
- Large ribosomal subunit protein eL31A
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