J4_8YLD_007

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CUUAAC*GGAAGAG*UC

Length

17 nucleotides

Bulged bases

8YLD|1|A|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|A|G|1674
8YLD|1|A|G|1675
*
8YLD|1|A|C|1693
8YLD|1|A|U|1694
8YLD|1|A|U|1695
8YLD|1|A|A|1696
8YLD|1|A|A|1697
8YLD|1|A|C|1698
*
8YLD|1|A|G|1747
8YLD|1|A|G|1748
8YLD|1|A|A|1749
8YLD|1|A|A|1750
8YLD|1|A|G|1751
8YLD|1|A|A|1752
8YLD|1|A|G|1753
*
8YLD|1|A|U|1772
8YLD|1|A|C|1773

Current chains

Chain A

25S rRNA

Nearby chains

Chain W

Large ribosomal subunit protein eL22A

Chain i

Large ribosomal subunit protein eL34A

Chain m

Large ribosomal subunit protein eL38