J4_8YLR_004

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YLR_004 not in the Motif Atlas

Homologous match to J4_8C3A_002

Geometric discrepancy: 0.1673

The information below is about J4_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|A|C|185
8YLR|1|A|U|186
8YLR|1|A|A|187
8YLR|1|A|U|188
8YLR|1|A|G|189
*
8YLR|1|A|C|205
8YLR|1|A|G|206
8YLR|1|A|U|207
8YLR|1|A|C|208
*
8YLR|1|A|G|212
8YLR|1|A|A|213
8YLR|1|A|G|214
*
8YLR|1|A|C|226
8YLR|1|A|G|227
8YLR|1|A|U|228
8YLR|1|A|G|229
8YLR|1|A|U|230
8YLR|1|A|G|231

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4A

Chain a

Large ribosomal subunit protein uL24A