J4_8YOP_004

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8YOP|1|L5|A|2366, 8YOP|1|L5|U|2369, 8YOP|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|C|2365
8YOP|1|L5|A|2366
8YOP|1|L5|A|2367
8YOP|1|L5|A|2368
8YOP|1|L5|U|2369
8YOP|1|L5|A|2370
8YOP|1|L5|U|2371
*
8YOP|1|L5|A|2389
8YOP|1|L5|G|2390
8YOP|1|L5|G|2391
*
8YOP|1|L5|C|2824
8YOP|1|L5|A|2825
8YOP|1|L5|U|2826
8YOP|1|L5|G|2827
8YOP|1|L5|U|2828
8YOP|1|L5|U|2829
*
8YOP|1|L5|A|3856
8YOP|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31