J4_8YOP_008
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8YOP_008 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.0765
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YOP|1|L5|G|3634
8YOP|1|L5|A|3635
8YOP|1|L5|C|3636
8YOP|1|L5|U|3637
8YOP|1|L5|G|3638
*
8YOP|1|L5|C|3650
8YOP|1|L5|A|3651
8YOP|1|L5|A|3652
8YOP|1|L5|A|3653
8YOP|1|L5|G|3654
*
8YOP|1|L5|U|3690
8YOP|1|L5|G|3691
8YOP|1|L5|A|3692
8YOP|1|L5|U|3693
8YOP|1|L5|U|3694
*
8YOP|1|L5|A|3821
8YOP|1|L5|U|3822
8YOP|1|L5|G|3823
8YOP|1|L5|A|3824
8YOP|1|L5|A|3825
8YOP|1|L5|C|3826
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: