J4_8YP6_002

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUU*AAUACAC*GGAAAG*CGG

Length

19 nucleotides

Bulged bases

8YP6|1|a|C|179, 8YP6|1|a|A|180, 8YP6|1|a|A|211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YP6_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.4535

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8YP6|1|a|C|139
8YP6|1|a|U|140
8YP6|1|a|U|141
*
8YP6|1|a|A|175
8YP6|1|a|A|176
8YP6|1|a|U|177
8YP6|1|a|A|178
8YP6|1|a|C|179
8YP6|1|a|A|180
8YP6|1|a|C|181
*
8YP6|1|a|G|207
8YP6|1|a|G|208
8YP6|1|a|A|209
8YP6|1|a|A|210
8YP6|1|a|A|211
8YP6|1|a|G|212
*
8YP6|1|a|C|219
8YP6|1|a|G|220
8YP6|1|a|G|221

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

Small ribosomal subunit protein uS17

Chain t

Small ribosomal subunit protein bS20