J4_8YUO_001

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8YUO|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YUO_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2742

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8YUO|1|A|G|115
8YUO|1|A|A|116
8YUO|1|A|G|117
8YUO|1|A|U|118
8YUO|1|A|A|119
8YUO|1|A|A|120
8YUO|1|A|U|121
8YUO|1|A|G|122
*
8YUO|1|A|U|239
8YUO|1|A|G|240
*
8YUO|1|A|C|286
8YUO|1|A|U|287
8YUO|1|A|A|288
8YUO|1|A|G|289
*
8YUO|1|A|C|311
8YUO|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17