J4_8YUO_002

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8YUO|1|A|C|183, 8YUO|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YUO_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.158

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8YUO|1|A|G|142
8YUO|1|A|A|143
8YUO|1|A|G|144
*
8YUO|1|A|C|178
8YUO|1|A|A|179
8YUO|1|A|U|180
8YUO|1|A|A|181
8YUO|1|A|A|182
8YUO|1|A|C|183
8YUO|1|A|G|184
*
8YUO|1|A|C|193
8YUO|1|A|C|194
8YUO|1|A|A|195
8YUO|1|A|A|196
8YUO|1|A|A|197
8YUO|1|A|G|198
*
8YUO|1|A|U|219
8YUO|1|A|G|220
8YUO|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20