J4_8YUO_006

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8YUO|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YUO_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1322

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8YUO|1|a|C|268
8YUO|1|a|C|269
*
8YUO|1|a|G|370
8YUO|1|a|A|371
8YUO|1|a|G|372
8YUO|1|a|U|373
8YUO|1|a|A|374
8YUO|1|a|G|375
*
8YUO|1|a|U|399
8YUO|1|a|G|400
8YUO|1|a|A|401
8YUO|1|a|A|402
8YUO|1|a|U|403
8YUO|1|a|A|404
8YUO|1|a|U|405
8YUO|1|a|G|406
*
8YUO|1|a|C|421
8YUO|1|a|A|422
8YUO|1|a|A|423
8YUO|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28