J4_8YUP_002
3D structure
- PDB id
- 8YUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 8YUP|1|A|C|183, 8YUP|1|A|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8YUP_002 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.1749
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8YUP|1|A|G|142
8YUP|1|A|A|143
8YUP|1|A|G|144
*
8YUP|1|A|C|178
8YUP|1|A|A|179
8YUP|1|A|U|180
8YUP|1|A|A|181
8YUP|1|A|A|182
8YUP|1|A|C|183
8YUP|1|A|G|184
*
8YUP|1|A|C|193
8YUP|1|A|C|194
8YUP|1|A|A|195
8YUP|1|A|A|196
8YUP|1|A|A|197
8YUP|1|A|G|198
*
8YUP|1|A|U|219
8YUP|1|A|G|220
8YUP|1|A|C|221
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain T
- 30S ribosomal protein S20
Coloring options: