J4_8YUP_006

3D structure

PDB id

8YUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8YUP|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YUP_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1227

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8YUP|1|a|C|268
8YUP|1|a|C|269
*
8YUP|1|a|G|370
8YUP|1|a|A|371
8YUP|1|a|G|372
8YUP|1|a|U|373
8YUP|1|a|A|374
8YUP|1|a|G|375
*
8YUP|1|a|U|399
8YUP|1|a|G|400
8YUP|1|a|A|401
8YUP|1|a|A|402
8YUP|1|a|U|403
8YUP|1|a|A|404
8YUP|1|a|U|405
8YUP|1|a|G|406
*
8YUP|1|a|C|421
8YUP|1|a|A|422
8YUP|1|a|A|423
8YUP|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28