3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
8YUQ|1|A|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8YUQ_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.2273
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8YUQ|1|A|G|115
8YUQ|1|A|A|116
8YUQ|1|A|G|117
8YUQ|1|A|U|118
8YUQ|1|A|A|119
8YUQ|1|A|A|120
8YUQ|1|A|U|121
8YUQ|1|A|G|122
*
8YUQ|1|A|U|239
8YUQ|1|A|G|240
*
8YUQ|1|A|C|286
8YUQ|1|A|U|287
8YUQ|1|A|A|288
8YUQ|1|A|G|289
*
8YUQ|1|A|C|311
8YUQ|1|A|C|312

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16
Chain Q
30S ribosomal protein S17

Coloring options:


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