J4_8YUQ_006

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8YUQ|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YUQ_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.109

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8YUQ|1|a|C|268
8YUQ|1|a|C|269
*
8YUQ|1|a|G|370
8YUQ|1|a|A|371
8YUQ|1|a|G|372
8YUQ|1|a|U|373
8YUQ|1|a|A|374
8YUQ|1|a|G|375
*
8YUQ|1|a|U|399
8YUQ|1|a|G|400
8YUQ|1|a|A|401
8YUQ|1|a|A|402
8YUQ|1|a|U|403
8YUQ|1|a|A|404
8YUQ|1|a|U|405
8YUQ|1|a|G|406
*
8YUQ|1|a|C|421
8YUQ|1|a|A|422
8YUQ|1|a|A|423
8YUQ|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28