J4_8YUQ_017
3D structure
- PDB id
- 8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.41 Å
Loop
- Sequence
- AUAG*CA*UG(G7M)(3AU)CC*GU
- Length
- 14 nucleotides
- Bulged bases
- 8YUQ|1|X|U|8, 8YUQ|1|X|3AU|47, 8YUQ|1|X|C|48
- QA status
- Modified nucleotides: G7M, 3AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8YUQ_017 not in the Motif Atlas
- Homologous match to J4_4QEI_001
- Geometric discrepancy: 0.3241
- The information below is about J4_4QEI_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_72305.5
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8YUQ|1|X|A|7
8YUQ|1|X|U|8
8YUQ|1|X|A|9
8YUQ|1|X|G|10
*
8YUQ|1|X|C|25
8YUQ|1|X|A|26
*
8YUQ|1|X|U|44
8YUQ|1|X|G|45
8YUQ|1|X|G7M|46
8YUQ|1|X|3AU|47
8YUQ|1|X|C|48
8YUQ|1|X|C|49
*
8YUQ|1|X|G|65
8YUQ|1|X|U|66
Current chains
- Chain X
- A-site tRNAIle2
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: