3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
AUAG*CA*UG(G7M)(3AU)CC*GU
Length
14 nucleotides
Bulged bases
8YUQ|1|X|U|8, 8YUQ|1|X|3AU|47, 8YUQ|1|X|C|48
QA status
Modified nucleotides: G7M, 3AU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8YUQ_017 not in the Motif Atlas
Homologous match to J4_4QEI_001
Geometric discrepancy: 0.3241
The information below is about J4_4QEI_001
Detailed Annotation
tRNA junction
Broad Annotation
No text annotation
Motif group
J4_72305.5
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW
Number of instances in this motif group
6

Unit IDs

8YUQ|1|X|A|7
8YUQ|1|X|U|8
8YUQ|1|X|A|9
8YUQ|1|X|G|10
*
8YUQ|1|X|C|25
8YUQ|1|X|A|26
*
8YUQ|1|X|U|44
8YUQ|1|X|G|45
8YUQ|1|X|G7M|46
8YUQ|1|X|3AU|47
8YUQ|1|X|C|48
8YUQ|1|X|C|49
*
8YUQ|1|X|G|65
8YUQ|1|X|U|66

Current chains

Chain X
A-site tRNAIle2

Nearby chains

Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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