J4_8YUR_006

3D structure

PDB id

8YUR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8YUR|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8YUR_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1242

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8YUR|1|a|C|268
8YUR|1|a|C|269
*
8YUR|1|a|G|370
8YUR|1|a|A|371
8YUR|1|a|G|372
8YUR|1|a|U|373
8YUR|1|a|A|374
8YUR|1|a|G|375
*
8YUR|1|a|U|399
8YUR|1|a|G|400
8YUR|1|a|A|401
8YUR|1|a|A|402
8YUR|1|a|U|403
8YUR|1|a|A|404
8YUR|1|a|U|405
8YUR|1|a|G|406
*
8YUR|1|a|C|421
8YUR|1|a|A|422
8YUR|1|a|A|423
8YUR|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28