J4_8Z70_004

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8Z70_004 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1692

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8Z70|1|A|C|185
8Z70|1|A|U|186
8Z70|1|A|A|187
8Z70|1|A|U|188
8Z70|1|A|G|189
*
8Z70|1|A|C|205
8Z70|1|A|G|206
8Z70|1|A|U|207
8Z70|1|A|C|208
*
8Z70|1|A|G|212
8Z70|1|A|A|213
8Z70|1|A|G|214
*
8Z70|1|A|C|226
8Z70|1|A|G|227
8Z70|1|A|U|228
8Z70|1|A|G|229
8Z70|1|A|U|230
8Z70|1|A|G|231

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4A

Chain a

Large ribosomal subunit protein uL24A