J4_8Z70_009

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8Z70_009 not in the Motif Atlas

Homologous match to J4_8C3A_009

Geometric discrepancy: 0.1293

The information below is about J4_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Z70|1|A|U|3010
8Z70|1|A|A|3011
8Z70|1|A|A|3012
*
8Z70|1|A|U|3042
8Z70|1|A|C|3043
*
8Z70|1|A|G|3098
8Z70|1|A|C|3099
8Z70|1|A|U|3100
*
8Z70|1|A|A|3134
8Z70|1|A|U|3135
8Z70|1|A|G|3136

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain Q

Large ribosomal subunit protein uL13A

Chain X

Large ribosomal subunit protein uL14A