J4_8Z70_010
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAG*CGU*AAGGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 8Z70|1|s|U|8, 8Z70|1|s|U|48, 8Z70|1|s|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8Z70_010 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.3151
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8Z70|1|s|G|7
8Z70|1|s|U|8
8Z70|1|s|A|9
8Z70|1|s|G|10
*
8Z70|1|s|C|26
8Z70|1|s|G|27
8Z70|1|s|U|28
*
8Z70|1|s|A|44
8Z70|1|s|A|45
8Z70|1|s|G|46
8Z70|1|s|G|47
8Z70|1|s|U|48
8Z70|1|s|C|49
8Z70|1|s|C|50
*
8Z70|1|s|G|66
8Z70|1|s|C|67
Current chains
- Chain s
- tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sg
- Small ribosomal subunit protein eS30A
- Chain x
- Elongation factor 1-alpha 1
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