J4_8Z70_012
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 8Z70|1|A|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8Z70_012 not in the Motif Atlas
- Homologous match to J4_8CRE_008
- Geometric discrepancy: 0.1562
- The information below is about J4_8CRE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8Z70|1|A|C|2654
8Z70|1|A|U|2655
8Z70|1|A|A|2656
8Z70|1|A|A|2657
8Z70|1|A|G|2658
*
8Z70|1|A|U|2712
8Z70|1|A|U|2713
8Z70|1|A|G|2714
8Z70|1|A|A|2715
8Z70|1|A|U|2716
*
8Z70|1|A|A|2740
8Z70|1|A|C|2741
8Z70|1|A|C|2742
*
8Z70|1|A|G|2751
8Z70|1|A|U|2752
8Z70|1|A|G|2753
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain G
- Large ribosomal subunit protein uL18
- Chain V
- Large ribosomal subunit protein eL21A
- Chain d
- Large ribosomal subunit protein eL29
- Chain q
- Large ribosomal subunit protein eL42A
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