J4_8Z71_006
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8Z71|1|A|U|1523, 8Z71|1|A|A|1524
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8Z71_006 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0949
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Z71|1|A|G|1492
8Z71|1|A|G|1493
8Z71|1|A|U|1494
8Z71|1|A|U|1495
8Z71|1|A|C|1496
*
8Z71|1|A|G|1520
8Z71|1|A|G|1521
8Z71|1|A|U|1522
8Z71|1|A|U|1523
8Z71|1|A|A|1524
8Z71|1|A|G|1525
*
8Z71|1|A|C|1614
8Z71|1|A|C|1615
*
8Z71|1|A|G|1829
8Z71|1|A|G|1830
8Z71|1|A|U|1831
8Z71|1|A|C|1832
8Z71|1|A|G|1833
8Z71|1|A|U|1834
8Z71|1|A|A|1835
8Z71|1|A|C|1836
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain T
- Large ribosomal subunit protein eL19A
- Chain Z
- Large ribosomal subunit protein uL23
- Chain i
- Large ribosomal subunit protein eL34A
- Chain l
- Large ribosomal subunit protein eL37A
- Chain m
- Large ribosomal subunit protein eL38
- Chain n
- Large ribosomal subunit protein eL39
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