J4_8ZDD_002
3D structure
- PDB id
- 8ZDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8ZDD|1|2|A|672, 8ZDD|1|2|A|1083, 8ZDD|1|2|C|1085, 8ZDD|1|2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZDD_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1083
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZDD|1|2|A|671
8ZDD|1|2|A|672
8ZDD|1|2|G|673
*
8ZDD|1|2|C|1032
8ZDD|1|2|G|1033
8ZDD|1|2|A|1034
8ZDD|1|2|A|1035
8ZDD|1|2|A|1036
8ZDD|1|2|G|1037
*
8ZDD|1|2|C|1078
8ZDD|1|2|C|1079
8ZDD|1|2|A|1080
8ZDD|1|2|U|1081
8ZDD|1|2|A|1082
8ZDD|1|2|A|1083
8ZDD|1|2|A|1084
8ZDD|1|2|C|1085
8ZDD|1|2|G|1086
8ZDD|1|2|A|1087
8ZDD|1|2|U|1088
8ZDD|1|2|G|1089
*
8ZDD|1|2|U|1160
8ZDD|1|2|U|1161
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS17
- Chain N
- Small ribosomal subunit protein uS15
- Chain O
- Small ribosomal subunit protein uS11
- Chain W
- Small ribosomal subunit protein uS8
- Chain X
- Small ribosomal subunit protein uS12
- Chain t
- Protein LTV1 homolog
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