J4_8ZEJ_005
3D structure
- PDB id
- 8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- UGAUUGG*CAC*GGGGUCGGAG*CUCUAUCA
- Length
- 28 nucleotides
- Bulged bases
- 8ZEJ|1|Y|U|8, 8ZEJ|1|Y|U|48, 8ZEJ|1|Y|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZEJ|1|Y|U|4
8ZEJ|1|Y|G|5
8ZEJ|1|Y|A|6
8ZEJ|1|Y|U|7
8ZEJ|1|Y|U|8
8ZEJ|1|Y|G|9
8ZEJ|1|Y|G|10
*
8ZEJ|1|Y|C|26
8ZEJ|1|Y|A|27
8ZEJ|1|Y|C|28
*
8ZEJ|1|Y|G|44
8ZEJ|1|Y|G|45
8ZEJ|1|Y|G|46
8ZEJ|1|Y|G|47
8ZEJ|1|Y|U|48
8ZEJ|1|Y|C|49
8ZEJ|1|Y|G|50
8ZEJ|1|Y|G|51
8ZEJ|1|Y|A|52
8ZEJ|1|Y|G|53
*
8ZEJ|1|Y|C|63
8ZEJ|1|Y|U|64
8ZEJ|1|Y|C|65
8ZEJ|1|Y|U|66
8ZEJ|1|Y|A|67
8ZEJ|1|Y|U|68
8ZEJ|1|Y|C|69
8ZEJ|1|Y|A|70
Current chains
- Chain Y
- P-site tRNA (Chain Y), A-site tRNA-PRO (Chain Z)
Nearby chains
- Chain M
- 30S ribosomal protein S13
- Chain Z
- Transfer RNA; tRNA
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- 50S ribosomal protein L16
- Chain y
- 50S ribosomal protein L27
Coloring options: