J4_8ZFF_001

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8ZFF|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZFF_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5451

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8ZFF|1|A|G|115
8ZFF|1|A|A|116
8ZFF|1|A|G|117
8ZFF|1|A|U|118
8ZFF|1|A|A|119
8ZFF|1|A|A|120
8ZFF|1|A|U|121
8ZFF|1|A|G|122
*
8ZFF|1|A|U|239
8ZFF|1|A|G|240
*
8ZFF|1|A|C|286
8ZFF|1|A|U|287
8ZFF|1|A|A|288
8ZFF|1|A|G|289
*
8ZFF|1|A|C|311
8ZFF|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17