J4_8ZFF_005

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8ZFF|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZFF_005 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2567

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8ZFF|1|a|C|268
8ZFF|1|a|C|269
*
8ZFF|1|a|G|370
8ZFF|1|a|A|371
8ZFF|1|a|G|372
8ZFF|1|a|U|373
8ZFF|1|a|A|374
8ZFF|1|a|G|375
*
8ZFF|1|a|U|399
8ZFF|1|a|G|400
8ZFF|1|a|A|401
8ZFF|1|a|A|402
8ZFF|1|a|U|403
8ZFF|1|a|A|404
8ZFF|1|a|U|405
8ZFF|1|a|G|406
*
8ZFF|1|a|C|421
8ZFF|1|a|A|422
8ZFF|1|a|A|423
8ZFF|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28