J4_8ZFF_006

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZFF_006 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0894

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8ZFF|1|a|G|297
8ZFF|1|a|G|298
8ZFF|1|a|A|299
8ZFF|1|a|A|300
8ZFF|1|a|G|301
*
8ZFF|1|a|C|316
8ZFF|1|a|G|317
8ZFF|1|a|C|318
8ZFF|1|a|G|319
*
8ZFF|1|a|C|323
8ZFF|1|a|A|324
8ZFF|1|a|G|325
*
8ZFF|1|a|C|337
8ZFF|1|a|G|338
8ZFF|1|a|U|339
8ZFF|1|a|A|340
8ZFF|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24