J4_8ZFF_007

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8ZFF|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFF|1|a|C|601
8ZFF|1|a|A|602
8ZFF|1|a|A|603
8ZFF|1|a|G|604
*
8ZFF|1|a|C|624
8ZFF|1|a|G|625
8ZFF|1|a|A|626
8ZFF|1|a|A|627
8ZFF|1|a|G|628
*
8ZFF|1|a|C|635
8ZFF|1|a|G|636
8ZFF|1|a|A|637
8ZFF|1|a|G|638
*
8ZFF|1|a|C|650
8ZFF|1|a|G|651
8ZFF|1|a|U|652
8ZFF|1|a|U|653
8ZFF|1|a|A|654
8ZFF|1|a|A|655
8ZFF|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15