J4_8ZFF_010

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8ZFF|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZFF_010 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2325

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8ZFF|1|a|U|1313
8ZFF|1|a|C|1314
*
8ZFF|1|a|G|1338
8ZFF|1|a|G|1339
8ZFF|1|a|U|1340
8ZFF|1|a|G|1341
8ZFF|1|a|A|1342
8ZFF|1|a|G|1343
*
8ZFF|1|a|C|1404
8ZFF|1|a|U|1405
*
8ZFF|1|a|A|1597
8ZFF|1|a|A|1598
8ZFF|1|a|U|1599
8ZFF|1|a|C|1600
8ZFF|1|a|G|1601
8ZFF|1|a|U|1602
8ZFF|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23