J4_8ZFG_006

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZFG_006 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0878

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8ZFG|1|a|G|297
8ZFG|1|a|G|298
8ZFG|1|a|A|299
8ZFG|1|a|A|300
8ZFG|1|a|G|301
*
8ZFG|1|a|C|316
8ZFG|1|a|G|317
8ZFG|1|a|C|318
8ZFG|1|a|G|319
*
8ZFG|1|a|C|323
8ZFG|1|a|A|324
8ZFG|1|a|G|325
*
8ZFG|1|a|C|337
8ZFG|1|a|G|338
8ZFG|1|a|U|339
8ZFG|1|a|A|340
8ZFG|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24