J4_8ZFG_007

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8ZFG|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFG|1|a|C|601
8ZFG|1|a|A|602
8ZFG|1|a|A|603
8ZFG|1|a|G|604
*
8ZFG|1|a|C|624
8ZFG|1|a|G|625
8ZFG|1|a|A|626
8ZFG|1|a|A|627
8ZFG|1|a|G|628
*
8ZFG|1|a|C|635
8ZFG|1|a|G|636
8ZFG|1|a|A|637
8ZFG|1|a|G|638
*
8ZFG|1|a|C|650
8ZFG|1|a|G|651
8ZFG|1|a|U|652
8ZFG|1|a|U|653
8ZFG|1|a|A|654
8ZFG|1|a|A|655
8ZFG|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15