J4_8ZFG_010

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8ZFG|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZFG_010 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2333

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8ZFG|1|a|U|1313
8ZFG|1|a|C|1314
*
8ZFG|1|a|G|1338
8ZFG|1|a|G|1339
8ZFG|1|a|U|1340
8ZFG|1|a|G|1341
8ZFG|1|a|A|1342
8ZFG|1|a|G|1343
*
8ZFG|1|a|C|1404
8ZFG|1|a|U|1405
*
8ZFG|1|a|A|1597
8ZFG|1|a|A|1598
8ZFG|1|a|U|1599
8ZFG|1|a|C|1600
8ZFG|1|a|G|1601
8ZFG|1|a|U|1602
8ZFG|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23