J4_8ZFG_015

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFG|1|a|G|2643
8ZFG|1|a|G|2644
8ZFG|1|a|G|2645
8ZFG|1|a|C|2646
*
8ZFG|1|a|G|2674
8ZFG|1|a|A|2675
8ZFG|1|a|C|2676
*
8ZFG|1|a|G|2731
8ZFG|1|a|G|2732
8ZFG|1|a|A|2733
8ZFG|1|a|A|2734
8ZFG|1|a|G|2735
*
8ZFG|1|a|U|2769
8ZFG|1|a|G|2770
8ZFG|1|a|C|2771

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13

Chain j

Large ribosomal subunit protein uL14