J4_8ZFI_003
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8ZFI|1|A|C|576, 8ZFI|1|A|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZFI|1|A|G|575
8ZFI|1|A|C|576
8ZFI|1|A|G|577
*
8ZFI|1|A|C|764
8ZFI|1|A|G|765
8ZFI|1|A|A|766
8ZFI|1|A|A|767
8ZFI|1|A|A|768
8ZFI|1|A|G|769
*
8ZFI|1|A|C|810
8ZFI|1|A|C|811
8ZFI|1|A|G|812
8ZFI|1|A|U|813
8ZFI|1|A|A|814
8ZFI|1|A|A|815
8ZFI|1|A|A|816
8ZFI|1|A|C|817
8ZFI|1|A|G|818
8ZFI|1|A|A|819
8ZFI|1|A|U|820
8ZFI|1|A|G|821
*
8ZFI|1|A|C|879
8ZFI|1|A|C|880
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- Small ribosomal subunit protein uS12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
- Chain U
- 30S ribosomal protein S21
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