J4_8ZFI_006

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGG*CAC*GGGGUCG*UA

Length

16 nucleotides

Bulged bases

8ZFI|1|Z|U|8, 8ZFI|1|Z|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZFI_006 not in the Motif Atlas

Homologous match to J4_9Q3R_015

Geometric discrepancy: 0.5366

The information below is about J4_9Q3R_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_95067.3

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

50

Unit IDs

8ZFI|1|Z|U|7
8ZFI|1|Z|U|8
8ZFI|1|Z|G|9
8ZFI|1|Z|G|10
*
8ZFI|1|Z|C|26
8ZFI|1|Z|A|27
8ZFI|1|Z|C|28
*
8ZFI|1|Z|G|44
8ZFI|1|Z|G|45
8ZFI|1|Z|G|46
8ZFI|1|Z|G|47
8ZFI|1|Z|U|48
8ZFI|1|Z|C|49
8ZFI|1|Z|G|50
*
8ZFI|1|Z|U|66
8ZFI|1|Z|A|67

Current chains

Chain Z

P-site tRNA (Chain-Y), A-site tRNA-PRO (Chain-Z)

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA