J4_9Q3R_015
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- G(4SU)AG*CGA*UAUACG*UC
- Length
- 15 nucleotides
- Bulged bases
- 9Q3R|1|w|4SU|8, 9Q3R|1|w|C|47
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q3R_015 not in the Motif Atlas
- Homologous match to J4_5HR6_001
- Geometric discrepancy: 0.2376
- The information below is about J4_5HR6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
9Q3R|1|w|G|7
9Q3R|1|w|4SU|8
9Q3R|1|w|A|9
9Q3R|1|w|G|10
*
9Q3R|1|w|C|25
9Q3R|1|w|G|26
9Q3R|1|w|A|27
*
9Q3R|1|w|U|43
9Q3R|1|w|A|44
9Q3R|1|w|U|45
9Q3R|1|w|A|46
9Q3R|1|w|C|47
9Q3R|1|w|G|49
*
9Q3R|1|w|U|65
9Q3R|1|w|C|66
Current chains
- Chain w
- A/T-site glycine tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain l
- Small ribosomal subunit protein uS12
- Chain z
- Elongation factor Tu 2
Coloring options: