J4_8ZFI_007

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8ZFI|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFI|1|b|C|268
8ZFI|1|b|C|269
*
8ZFI|1|b|G|370
8ZFI|1|b|A|371
8ZFI|1|b|G|372
8ZFI|1|b|U|373
8ZFI|1|b|A|374
8ZFI|1|b|G|375
*
8ZFI|1|b|U|399
8ZFI|1|b|G|400
8ZFI|1|b|A|401
8ZFI|1|b|A|402
8ZFI|1|b|U|403
8ZFI|1|b|A|404
8ZFI|1|b|U|405
8ZFI|1|b|G|406
*
8ZFI|1|b|C|421
8ZFI|1|b|A|422
8ZFI|1|b|A|423
8ZFI|1|b|G|424

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 0

50S ribosomal protein L28

Chain h

50S ribosomal protein L9