J4_8ZFI_010

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8ZFI|1|b|G|1271, 8ZFI|1|b|A|1272, 8ZFI|1|b|U|1273, 8ZFI|1|b|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZFI_010 not in the Motif Atlas

Homologous match to J4_8B0X_007

Geometric discrepancy: 0.132

The information below is about J4_8B0X_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_19484.1

Basepair signature

cWW-F-cWW-F-tSS-F-cWW-F-cWW

Number of instances in this motif group

8

Unit IDs

8ZFI|1|b|C|1270
8ZFI|1|b|G|1271
8ZFI|1|b|A|1272
8ZFI|1|b|U|1273
8ZFI|1|b|A|1274
8ZFI|1|b|A|1275
8ZFI|1|b|A|1276
*
8ZFI|1|b|U|1294
8ZFI|1|b|C|1295
*
8ZFI|1|b|G|1645
8ZFI|1|b|C|1646
8ZFI|1|b|U|1647
8ZFI|1|b|U|1648
*
8ZFI|1|b|A|2009
8ZFI|1|b|G|2010

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 4

50S ribosomal protein L32

Chain o

50S ribosomal protein L17

Chain t

50S ribosomal protein L22