J4_8ZFI_010
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8ZFI|1|b|G|1271, 8ZFI|1|b|A|1272, 8ZFI|1|b|U|1273, 8ZFI|1|b|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZFI|1|b|C|1270
8ZFI|1|b|G|1271
8ZFI|1|b|A|1272
8ZFI|1|b|U|1273
8ZFI|1|b|A|1274
8ZFI|1|b|A|1275
8ZFI|1|b|A|1276
*
8ZFI|1|b|U|1294
8ZFI|1|b|C|1295
*
8ZFI|1|b|G|1645
8ZFI|1|b|C|1646
8ZFI|1|b|U|1647
8ZFI|1|b|U|1648
*
8ZFI|1|b|A|2009
8ZFI|1|b|G|2010
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain o
- 50S ribosomal protein L17
- Chain t
- 50S ribosomal protein L22
Coloring options: